Research Archive

Chen Shen, Peggy J. Bowers, and Yaneer Bar-Yam, How much sodium should we eat?, Progress in Preventive Medicine 5(1): e0026 (February 2020).

Alexander Siegenfeld and Yaneer Bar-Yam, Negative representation and instability in democratic elections, Nature Physics (January 13, 2020).

Alexander F. Siegenfeld and Yaneer Bar-Yam, An introduction to complex systems science and its applications, Complexity 2020 (July 27, 2020).

Alfredo J. Morales, Xiaowen Dong, Yaneer Bar-Yam and Alex ‘Sandy’ Pentland, Segregation and polarization in urban areas, Royal Society Open Science 6(10): 190573 (October 23, 2019).

Leila Hedayatifar, Rachel A. Rigg, Yaneer Bar-Yam, and Alfredo J. Morales, U.S. social fragmentation at multiple scales, Journal of the Royal Society Interface (October 8, 2019).

Taeer Bar-Yam, Owen Lynch, and Yaneer Bar-Yam, The inherent instability of disordered systems, arXiv:1812.00450 (December 2, 2018).

Yaneer Bar-Yam, Power and leadership: A complex systems science approach Part I—Representation and dynamics, arXiv:1811.02896 (November 7, 2018).

Leila Hedayatifar, Yaneer Bar-Yam, and Alfredo J. Morales, Social fragmentation at multiple scales, arXiv:1809.07676 (September 20, 2018).

Comparison of the roughness scaling of the surface topography of Earth and Venus, arXiv:1809.02457 (September 7, 2018).

Joseph Norman and Yaneer Bar-Yam, Special operations forces: A global immune system?, in Unifying Themes in Complex Systems IX, A.J. Morales, C. Gershenson, D. Braha, A.A. Minai, Y. Bar-Yam, Eds. (Springer, July 23, 2018).

Rapahel Parens and Yaneer Bar-Yam, Step by step to stability and peace in Syria, in Unifying Themes in Complex Systems IX, A.J. Morales, C. Gershenson, D. Braha, A.A. Minai, Y. Bar-Yam, Eds. (Springer, July 23, 2018).

Blake C. Stacey, Yaneer Bar-Yam, The stock market has grown unstable since February 2018, arXiv:1806.00529 (June 1, 2018).

Yaneer Bar-Yam and Subodh P. Patil, Renormalization of sparse disorder in the Ising model, arXiv:1805.12556 (May 31, 2018).

Pedro J. Zufiria, David Pastor-Escuredo, Luis Úbeda-Medina, Miguel A. Hernandez-Medina, Iker Barriales-Valbuena, Alfredo J. Morales, Damien C. Jacques, Wilfred Nkwambi, M. Bamba Diop, John Quinn, Paula Hidalgo-Sanchís, and Miguel Luengo-Oroz, Identifying seasonal mobility profiles from anonymized and aggregated mobile phone data. Application in food security, PLoS ONE 13(4): e0195714 (April 26, 2018).

Yaneer Bar-Yam, Jean Langlois-Meurinne, Mari Kawakatsu, and Rodolfo Garcia, Preliminary steps toward a universal economic dynamics for monetary and fiscal policy, arXiv:1710.06285 (October 10, 2017; Updated December 29, 2017).

Raphael Parens, H. Frederik Nijhout, Alfredo Morales, Felipe Xavier Costa, and Yaneer Bar-Yam, A possible link between pyriproxyfen and microcephaly, PLOS Currents Outbreaks (November 27, 2017).

Yaneer Bar-Yam, H. Frederik Nijhout, Raphael Parens, Felipe Costa, and Alfredo J. Morales, The case for pyriproxyfen as a potential cause of microcephaly; from biology to epidemiology, arXiv:1703.03765 (2017).

Vincent Wong and Yaneer Bar-Yam, How do people differ? A social media approach, arXiv:1708.02900 (August 9, 2017).

Benjamin Allen, Blake C. Stacey, Yaneer Bar-Yam, Multiscale information theory and the marginal utility of information, Entropy 19(6): 273 (June 13, 2017).

Justin Werfel, Donald E. Ingber, and Yaneer Bar-Yam, Theory and associated phenomenology for intrinsic mortality arising from natural selection, PLOS One (March 29, 2017).

Alfredo J. Morales, Vaibhav Vavilala, Rosa M. Benito, and Yaneer Bar-Yam, Global patterns of synchronization in human communications, Journal of the Royal Society Interface (March 1, 2017), doi: 10.1098/rsif.2016.1048.

Daniel Cooney, Francisco Prieto-Castrillo, and Yaneer Bar-Yam, Analysis of infectious-recovery epidemic models for membership dynamics of online social networks, arXiv:1608.07870 (August 29, 2016).

Daniel Cooney, Vincent Wong, Yaneer Bar-Yam, Beyond contact tracing: Community-based early detection for Ebola response, PLoS Currents Outbreaks (May 19, 2016).

Yaneer Bar-Yam, From big data to important information, Complexity 21(S2): 73-98, (April 25, 2016), doi: 10.1002/cplx.21785.

Dominic K. Albino, Katriel Friedman, Yaneer Bar-Yam, and William Glenney, Military strategy in a complex world, arXiv:1602.05670 (February 18, 2016).

Raphael Parens and Yaneer Bar-Yam, Step by step to stability and peace in Syria, arXiv:1602.06835 (February 9, 2016).

Marco Lagi, Yavni Bar-Yam, Karla Z. Bertrand, and Yaneer Bar-Yam, Accurate market price formation model with both supply-demand and trend-following for global food prices providing policy recommendations, PNAS (September 26, 2015), doi: 10.1073/pnas.1413108112.

Yaneer Bar-Yam, Global civilization and counterterrorism, CTC Sentinel 8(7): 17-22 (July 28, 2015).

Yaneer Bar-Yam, The limits of phenomenology: From behaviorism to drug testing and engineering, Complexity 21(S1): 181-189 (2015).

David D. Chinellato, Irving R. Epstein, Dan Braha, Yaneer Bar-Yam, and Marcus A.M. de Aguiar, Dynamical response of networks under external perturbations: Exact results, Journal of Statistical Physics 159: 221–230 (2015).

Justin Werfel, Donald E. Ingber, and Yaneer Bar-Yam, Programed death is favored by natural selection in spatial systems, Physical Review Letters 114: 238103 (2015), doi: 10.1103/PhysRevLett.114.238103.

Dion Harmon, Marco Lagi, Marcus A.M. de Aguiar, David D. Chinellato, Dan Braha, Irving Epstein, and Yaneer Bar-Yam, Anticipating economic market crises using measures of collective panic, PLoS ONE 10(7): e0131871 (July 2015), doi:10.1371/journal.pone.0131871.

Joseph Norman, Rupert Read, Yaneer Bar-Yam, and Nassim Nicholas Taleb, Climate models and precautionary measures, Issues in Science and Technology (Summer 2015).

Marco Lagi, Karla Z. Bertrand, and Yaneer Bar-Yam, Food security and political instability: From ethanol and speculation to riots and revolution, in Conflict and Complexity: Countering terrorism, insurgency, ethnic and regional violence, Philip Vos Fellman, Yaneer Bar-Yam, and Ali A. Minai, Eds. (Springer, 2015).

Yavni Bar-Yam, Marco Lagi, and Yaneer Bar-Yam, South African riots: Repercussion of the global food crisis and US drought, in Conflict and Complexity: Countering terrorism, insurgency, ethnic and regional violence, Philip Vos Fellman, Yaneer Bar-Yam, and Ali A. Minai, Eds. (Springer, 2015).

Andreas Gros, Alexander S. Gard-Murray, and Yaneer Bar-Yam, Conflict in Yemen: From ethnic fighting to food riots, in Conflict and Complexity: Countering terrorism, insurgency, ethnic and regional violence, Philip Vos Fellman, Yaneer Bar-Yam, and Ali A. Minai, Eds. (Springer, 2015).

Alexander S. Gard-Murray and Yaneer Bar-Yam, Complexity and the limits of revolution: What will happen to the Arab Spring?, in Conflict and Complexity: Countering terrorism, insurgency, ethnic and regional violence, Philip Vos Fellman, Yaneer Bar-Yam, and Ali A. Minai, Eds. (Springer, 2015).

Urbano França, Hiroki Sayama, Colin McSwiggen, Roozbeh Daneshvar, and Yaneer Bar-Yam, Visualizing the “heartbeat” of a city with tweets, Complexity (April 21, 2015).

Yaneer Bar-Yam, Risking it all: Why are public health authorities not concerned about Ebola in the US? Part I. Fat tailed distributions, arXiv:1411.1472 (November 5, 2014).

Nassim Nicholas Taleb, Rupert Read, Raphael Douady, Joseph Norman, and Yaneer Bar-Yam, The precautionary principle (with application to the genetic modification of organisms), arXiv:1410.5787 (October 17, 2014).

Benjamin Allen, Blake C. Stacey, and Yaneer Bar-Yam, An information-theoretic formalism for multiscale structure in complex systems, arXiv:1409.4708 (September 16, 2014).

Alex Rutherford, Dion Harmon, Justin Werfel, Alexander S. Gard-Murray, Shlomiya Bar-Yam, Andreas Gros, Ramon Xulvi-Brunet, and Yaneer Bar-Yam, Good fences: The importance of setting boundaries for peaceful coexistence, PLoS ONE 9(5): e95660 (May 21, 2014).

Julius Adebayo, Tiziana Musso, Kawandeep Virdee, Casey Friedman, and Yaneer Bar-Yam, An exploration of social identity: The structure of the BBC news-sharing community on Twitter, Complexity 19(5): 55-63 (2014).

Yaneer Bar-Yam, Complex systems science and obesity, at Experimental Biology Symposium (San Diego, CA, 2014).

Dominic K. Albino, Anzi Hu, and Yaneer Bar-Yam, Corporations and regulators: The game of influence in regulatory capture, arXiv:1310.0057 (October 1, 2013).

Yavni Bar-Yam, Marcus A.M. de Aguiar, and Yaneer Bar-Yam, The $500 AAPL close: Manipulation or hedging? A quantitative analysis, arXiv:1402.0910 (September 3, 2013).

Karla Z. Bertrand, Maya Bialik, Kawandeep Virdee, Andreas Gros, and Yaneer Bar-Yam, Sentiment in New York City: A high resolution spatial and temporal view, arXiv:1308.5010 (August 20, 2013).

Dominic K. Albino, Casey Friedman, Yaneer Bar-Yam, Fuel policy wreaks global havoc, Boston Herald (August 3, 2013).

Alexander S. Gard-Murray and Yaneer Bar-Yam, Complexity and the limits of revolution: What will happen to the Arab Spring?, arXiv:1212.3041 (December 11, 2012, Re-released July 16, 2013).

Casey Friedman, Dominic K. Albino, and Yaneer Bar-Yam, Political stability and military intervention in Egypt, arXiv:1307.3982 (July 8, 2013).

Amaç Herdağdelen, Wenyun Zuo, Alexander S. Gard-Murray, and Yaneer Bar-Yam, An exploration of social identity: The geography and politics of news-sharing communities in Twitter, Complexity 19: 10-20 (2013).

Yaneer Bar-Yam, Shlomiya Bar-Yam, Karla Z. Bertrand, Nancy Cohen, Alexander S. Gard-Murray, Helen P. Harte, and Luci Leykum, A complex systems science approach to healthcare costs and quality, in Handbook of Systems and Complexity in Health (Springer, 2013), pp. 855-877.

Yaneer Bar-Yam, Dion Harmon, Keith Nesbitt, May Lim, Suzanne Smith, and Bradley A. Perkins, Opportunities in delivery of preventive services in retail settings, in Handbook of Systems and Complexity in Health (Springer, 2013), pp. 879-887.

Michael J. Widener, Yavni Bar-Yam, Andrea Gros, Sara S. Metcalf, and Yaneer Bar-Yam, Modeling policy and agricultural decisions in Afghanistan, GeoJournal 78(4): 591-599 (2013).

Michael J. Widener, Sara S. Metcalf, and Yaneer Bar-Yam, Agent-based modeling of policies to improve urban food access for low-income populations, Applied Geography 40: 1-10 (2013).

Justin Werfel, Silva Krause, Ashley G. Bischof, Robert J. Mannix, Heather Tobin, Yaneer BarYam, Robert M. Bellin, and Donald E. Ingber, How changes in extracellular matrix mechanics and gene expression variability might combine to drive cancer progression, PLoS ONE 8: e76122 (2013).

Elizabeth M. Baptestini, Marcus A.M. de Aguiar, and Yaneer Bar-Yam, Conditions for neutral speciation via isolation by distance, Journal of Theoretical Biology 335: 51–56 (2013).

Yavni Bar-Yam, Dion Harmon, and Yaneer Bar-Yam, Computationally tractable pairwise complexity profile, Complexity 18(5): 20-27 (May, 2013).

Marcus A.M. De Aguiar, Andreas Gros, Yaneer Bar-Yam, Jose G. Venegas, and Tilo Winkler, What causes airway instability and ventilation defects during bronchoconstriction in asthma?, American Thoracic Society 2013 International Conference (May 17-22, 2013).

Ayana B. Martins, Marcus A.M. de Aguiar, and Yaneer Bar-Yam, Evolution and stability of ring species, PNAS 201217034 (March 11, 2013).

Blake Stacey and Yaneer Bar-Yam, Principles of Security: human, cyber and biological, Report to the Chief of Naval Operations Strategic Studies Group, arXiv:1303.2682 (June 1, 2008, public February 28, 2013).

Luís Vilar, Duarte Araújo, Keith Davids, and Yaneer Bar-Yam, Science of winning soccer: Emergent pattern-forming dynamics in association football, Journal of Systems Science and Complexity 26(1): 73–84 (February 13, 2013).

Yavni Bar-Yam, Marco Lagi, and Yaneer Bar-Yam, South African riots: Repercussion of the global food crisis and US drought, arXiv:1307.526 (January 8, 2013).

Michael J. Widener, Sara S. Metcalf, and Yaneer Bar-Yam, Developing a mobile produce distribution system for low-income urban residents in food deserts, Journal of Urban Health (2012).

Dominic K. Albino, Karla Z. Bertrand, and Yaneer Bar-Yam, Food for fuel: The price of ethanol, arXiv:1210.6080 (October 4, 2012).

David M. Schneider, Eduardo de Carmo, Yaneer Bar-Yam, and Marcus A.M. de Aguiar, Robustness against extinction by stochastic sex determination in small populations, Physical Review E 86: 041104 (October 2, 2012).

Marco Lagi and Yaneer Bar-Yam, The European debt crisis: Defaults and market equilibrium, arXiv: 1209.6369 (September 27, 2012).

Andreas Gros, Alexander S. Gard-Murray, and Yaneer Bar-Yam, Conflict in Yemen: From ethnic fighting to food riots, arXiv:1207.5778 (July 24, 2012).

Marco Lagi, Yavni Bar-Yam, and Yaneer Bar-Yam, UPDATE July 2012 — The food crises: The US drought, arXiv: 1209.6376 (July 23, 2012).

Elizabeth M. Baptestini, Marcus A.M. de Aguiar, and Yaneer Bar-Yam, The role of sex separation in neutral speciation, Theoretical Ecology 6(2): 1-11 (2012).

Marco Lagi, Yavni Bar-Yam, Karla Z. Bertrand, and Yaneer Bar-Yam, UPDATE February 2012 — The food crises: Predictive validation of a quantitative model of food prices including speculators and ethanol conversion, arXiv:1203.1313 (March 6, 2012).

Vedant Misra, Marco Lagi, Yaneer Bar-Yam, Evidence of market manipulation in the financial crisis, arXiv:1112.3095, (December 13, 2011, Addendum: January 4, 2012).

Blake C. Stacey, Andreas Gros, and Yaneer Bar-Yam, Beyond the mean field in host-pathogen spatial ecology, arXiv:1110.3845 (October 18, 2011).

Marco Lagi, Yavni Bar-Yam, Karla Z. Bertrand, and Yaneer Bar-Yam, The food crises: A quantitative model of food prices including speculators and ethanol conversion, arXiv:1109.4859 (September 21, 2011).

Marco Lagi, Karla Z. Bertrand, and Yaneer Bar-Yam, The food crises and political instability in North Africa and the Middle East, arXiv:1108.2455 (August 10, 2011).

Dan Braha, Blake Stacey, and Yaneer Bar-Yam, Corporate competition: A self-organized network, Social Networks 33(3): 219-230 (July 2011).

Marcus A.M. de Aguiar and Yaneer Bar-Yam, The Moran model as a dynamical process on networks and its implications for neutral speciation, Physical Review E 84: 031901 (2011).

Michael J. Widener, Sara S. Metcalf, and Yaneer Bar-Yam, Dynamic urban food environments: A temporal analysis of access to healthy foods, American Journal of Preventive Medicine 41(4): 439-441 (2011).

Dion Harmon, Blake Stacey, Yavni Bar-Yam, and Yaneer Bar-Yam, Networks of economic market interdependence and systemic risk, arXiv:1011.3707v2 (November 16, 2010).

Michael J. Wade, David S. Wilson, Charles Goodnight, Doug Taylor, Yaneer Bar-Yam, Marcus A. M. de Aguiar, Blake Stacey, Justin Werfel, Guy A. Hoelzer, Edmund D. Brodie III, Peter Fields, Felix Breden, Timothy A. Linksvayer, Jeffrey A. Fletcher, Peter J. Richerson, James D. Bever, J. David Van Dyken, and Peter Zee, Multilevel and kin selection in a connected world, Nature 463: E8-E9 (2010).

Vedant Misra, Dion Harmon, and Yaneer Bar-Yam, Vulnerability analysis of high dimensional complex systems, Lecture Notes in Computer Science 6366: 560-572 (2010).

Scott A. Hill and Dan Braha, Dynamic model of time-dependent complex networks, Physical Review E 82(4): 046105 (2010).

Yosef E. Maruvka, Nadav M. Shnerb, Yaneer Bar-Yam, and John Wakeley, Recovering population parameters from a single gene genealogy: An unbiased estimator of the growth rate, Molecular Biology and Evolution 28(5): 1617–1631 (2010).

Benjamin Allen, Mark Kon, and Yaneer Bar-Yam, A new phylogenetic diversity measure generalizing the Shannon index and its application to Phyllostomid bats, 174(2) (2009).

Yaneer Bar-Yam, Dion Harmon, and Benjamin de Bivort, Attractors and democratic dynamics, Science 323(5917): 1016-1017 (2009).

Chris Foote, Jeff Fuhrer, Eileen Mauskopf, and Paul S. Willen, A proposal to help distressed homeowners: A government payment-sharing plan, Public Policy Briefs (Federal Reserve Bank of Boston, July 9, 2009).

Marcus A.M. de Aguiar, Michel Baranger, Elizabeth M. Baptestini, Les Kaufman, and Yaneer Bar-Yam, Global patterns of speciation and diversity, Nature 460: 384-387 (2009).

Reuven Cohen, Daryush Jonathan Dawid, Mehran Kardar, and Yaneer Bar-Yam, Unusual percolation in simple small-world networks, Physical Review E 79(6) (2009).

Robert C. Pozen and Yaneer Bar-Yam, There's a better way to prevent ‘bear raids,' Wall Street Journal (November 18, 2008).

Justin Werfel, Yaneer Bar-Yam, Donald Ingber, Bioinspired environmental coordination in spatial computing systems, Workshop on Spatial Computing, at Second IEEE International Conference on Self-Adaptive and Self-Organizing Systems (SASO 2008), Venice, Italy (2008).

Charles Goodnight, Erik Rauch, Hiroki Sayama, Marcus de Aguiar, Michel Baranger, and Yaneer Bar-Yam, Evolution in spatial predator-prey models and the "prudent predator:” The inadequacy of steady-state organism fitness and the concept of individual and group selection, Complexity 13: 23-44 (2008).

May Lim, Dan Braha, Sanith Wijesinghe, Stephenson Tucker, and Yaneer Bar-Yam, Preferential detachment in broadcast signaling networks: connectivity and cost trade-off, Europhysics Letters 79(5): 58005 (2007).

Benjamin de Bivort, Sui Huang, and Yaneer Bar-Yam, Empirical multiscale networks of cellular regulation, PLoS Computational Biology 3: e207 (2007

Benjamin Lovegren de Bivort, Chun-Chung Chen, Fabrizio Perretti, Giacomo Negro, Thomas M. Philip, and Yaneer Bar-Yam, Metabolic implications for the mechanism of mitochondrial endosymbiosis and human hereditary disorders, Journal of Theoretical Biology (2007).

Dan Braha and Yaneer Bar-Yam, The statistical mechanics of complex product development: Empirical and analytical results, Management Science 53: 1127-1145 (2007).

May Lim, Richard Metzler, and Yaneer Bar-Yam, Global pattern formation and ethnic/cultural violence, Science 317: 5844 (2007).

Dan Braha and Yaneer Bar-Yam, From centrality to temporary fame: Dynamic centrality in complex networks, Complexity 12: 59-36 (2006).

Yaneer Bar-Yam, Improving the effectiveness of health care and public health: A multi-scale complex systems analysis, American Journal of Public Health 96(3): 459-466 (2006).

Helene M. Langevin, Yaneer Bar-Yam, Donna Rizzo, and James R. Fox, Science meets Eastern medicine: Connective tissue, "qi" and network connectivity, at International Conference on Complex Systems (2006).

Yaneer Bar-Yam and Alice Davidson, Environmental complexity: Information for human-environment well-being, in Unifying Themes in Complex Systems (Springer, 2006), pp. 157-168.

Yaneer Bar-Yam, Engineering complex systems: Multiscale analysis and evolutionary engineering, in Complex Engineered Systems: Where Science Meets Technology, Dan Braha, Ali Minai, Yaneer Bar-Yam, Eds. (Springer, 2006).

D. Braha and Y. Bar-Yam, The structure and dynamics of complex product design, in Complex Engineered Systems: Where Science Meets Technology, Dan Braha, Ali Minai, Yaneer Bar-Yam, Eds. (Springer, 2006).

Ali Minai, Dan Braha, and Yaneer Bar-Yam, Complex engineered systems: A new paradigm, in Complex Engineered Systems: Where Science Meets Technology, Dan Braha, Ali Minai, Yaneer Bar-Yam, Eds. (Springer, 2006).

Mark Klein, Hiroki Sayama, Peyman Faratin, and Yaneer Bar-Yam, The dynamics of collaborative design: Insights from complex systems and negotiation research, in Complex Engineered Systems: Where Science Meets Technology, Dan Braha, Ali Minai, Yaneer Bar-Yam, Eds. (Springer, 2006).

Erik M. Rauch and Yaneer Bar-Yam, Long-range interaction and evolutionary stability in a predator-prey system, Physical Review E 73: 020903 (2006).

Justin Werfel, Yaneer Bar-Yam, Daniela Rus, and Radhika Nagpal, Distributed construction by mobile robots with enhanced building blocks, in Proceedings of the 2006 IEEE International Conference on Robotics and Automation (ICRA 2006), Orlando, Florida (2006).

Yaneer Bar-Yam, About engineering complex systems: Multiscale analysis and evolutionary engineering, in Engineering Self Organising Systems: Methodologies and Applications, S. Brueckner, G. Di Marzo Serugendo, A. Karageorgos, R. Nagpal, Eds. (Springer, 2005).

Yaneer Bar-Yam, Global control, ethnic violence and terrorism, in Making Things Work (Knowledge Press, 2005).

Justin Werfel, Yaneer Bar-Yam, and Radhika Nagpal, Building patterned structures with robot swarms, in Proceedings of the Nineteenth International Joint Conference on Artificial Intelligence (IJCAI 2005), Scotland, UK, 1495Ð1502 (2005).

Justin Werfel, Yaneer Bar-Yam, and Radhika Nagpal, Construction by robot swarms using extended stigmergy, AI Memo AIM-2005-011 (MIT Computer Science and Artificial Intelligence Lab, 2005).

Sui Huang, Gabriel Eichler, Yaneer Bar-Yam, and Donald E. Ingber, Cell fates as high-dimensional attractor states of a complex gene-regulatory network, Physical Review Letters 94: 128701 (2005).

Mark Klein, Richard Metzler, Yaneer Bar-Yam, Handling emergent resource use oscillations, IEEE Transcations on Systems, Man, and Cybernetics, Part A: Systems and Humans 35(3): 327-336 (2005).

Marcus A. M. de Aguiar, Irving Epstein, and Yaneer Bar-Yam, Analytically solvable model of probabilistic network dynamics, Physical Review E 72: 067102 (2005).

Erik M. Rauch and Yaneer Bar-Yam, Estimating the total genetic diversity of a spatial field population from a sample and implications of its dependence on habitat areas, Proceedings of the National Academy of Sciences 102: 9826-9829 (2005).

Marcus A.M. de Aguiar and Yaneer Bar-Yam, Spectral analysis and the dynamic response of complex networks, Physical Review E 71: 016106 (2005).

Richard Metzler and Yaneer Bar-Yam, Multiscale complexity of correlated Gaussians, Physical Review E 71: 046114 (2005).

Mark Klein, Richard Metzler, Yaneer Bar-Yam, Handling emergent resource use oscillations, IEEE Transcations on Systems, Man, and Cybernetics, Part A: Systems and Humans 35(3): 327-336 (2005).

Yaneer Bar-Yam, About engineering complex systems: Multiscale analysis and evolutionary engineering, in Engineering Self-Organising Systems: Methodologies and Applications, S. Brueckner, G. Di Marzo Serugendo, A. Karageorgos, R. Nagpal, Eds. (Springer-Verlag, 2005), pp. 16-31.

Erik M. Rauch and Yaneer Bar-Yam, Theory predicts uneven distribution of genetic diveristy within species, Nature 431: 449-452 (September 23, 2004).

Richard Metzler, Yaneer Bar-Yam, and Mehran Kardar, Information flow through a chaotic channel: prediction and postdiction at finite resolution, Physical Review E 70: 026205 (2004).

Benjamin de Bivort, Sui Huang, and Yaneer Bar-Yam, Dynamics of cellular-level function and regulation derived from Murine expression array data, PNAS 101: 17687-17692 (2004).

Justin K. Werfel and Yaneer Bar-Yam, The evolution of reproductive restraint through social communication, PNAS 101: 11019-11024 (2004).

Marcus A.M. de Aguiar, Erik M. Rauch, and Yaneer Bar-Yam, Invasion and extinction in the mean field approximation for a spatial host-pathogen model, Journal of Statistical Physics 114: 1417-1451 (2004).

Dan Braha and Yaneer Bar-Yam, Information flow structure in large-scale product development organizational networks, in Smart Business Networks, Peter Vervest, et al. Eds., Chapter 8 (Springer Verlag, 2004).

Yaneer Bar-Yam and Irving R. Epstein, Response of complex networks to stimuli, PNAS 101(13): 4341-4345 (2004).

Yaneer Bar-Yam, Multiscale complexity/entropy, Advances in Complex Systems 7: 47-63 (2004).

Dan Braha and Yaneer Bar-Yam, Topology of large-scale engineering problem-solving networks, Physical Review E 69: 016113 (2004).

S. Gheorghiu-Svirschevski and Yaneer Bar-Yam, Multiscale analysis of information correlations in an infinite-range, ferromagnetic Ising system, Physical Review E 70: 066115 (2004).

Yaneer Bar-Yam, A mathematical theory of strong emergence using multiscale variety, Complexity 9(6): 15-24 (2004).

Yaneer Bar-Yam, Multiscale variety in complex systems, Complexity 9(4): 37-45 (2004).

Benjamin de Bivort, Sui Huang, and Y. Bar-Yam, Dynamics of cellular level function and regulation derived from murine expression array data, PNAS 101(51): 17687-17692 (2004).

Mark Klein, Hiroki Sayama, Peyman Faratin, and Yaneer Bar-Yam, The dynamics of collaborative design: Insights from complex systems and negotiation research, Concurrent Engineering: Research and Applications (CERA Journal) 11(3): 201-209 (September 2003).

Mark Klein, Peyman Faratin, Hiroki Sayama, Yaneer Bar-Yam, Negotiating complex contracts, Group Decision and Negotiation 12(2): 111–125 (2003).

Mark Klein, Hiroki Sayama, Peyman Faratin, and Yaneer Bar-Yam, A complex systems perspective on how agents can support collaborative design, in Agent Supported Cooperative Work, Yiming Ye and Elizabeth F. Churchill, Eds. (Springer, 2003), pp. 255-271.

Yaneer Bar-Yam, When systems engineering Fails — Toward complex systems engineering, in International Conference on Systems, Man & Cybernetics 2003, Vol. 2 (IEEE Press, Piscataway, NJ, 2003), pp. 2021- 2028.

Erik M. Rauch, Hiroki Sayama, and Yaneer Bar-Yam, Dynamics and genealogy of strains in spatially extended host pathogen models, Journal of Theoretical Biology 221: 655-664 (2003).

Hiroki Sayama, Les Kaufman, and Yaneer Bar-Yam, Spontaneous pattern formation and diversity in spatially structured evolutionary ecology, Journal of Conservation Biology 17: 893 (2003)

Hiroki Sayama, Les Kaufman, and Yaneer Bar-Yam, Spontaneous pattern formation and genetic diversity in habitats with irregular geographical features, Conservation Biology 17(3): 893-900 (2003).

Marcus A.M. de Aguiar, Michel Baranger, Yaneer Bar-Yam, and Hiroki Sayama, Robustness of spontaneous pattern formation in spatially distributed genetic populations, Brazilian Journal of Physics 33: 514 (2003).

Hiroki Sayama, Marcus A.M. de Aguiar, Yaneer Bar-Yam, and Michel Baranger, Interplay between Turing pattern formation and domain coarsening in spatially extended population models, FORMA 18 (2003).

Erik M. Rauch, Marcus A.M. de Aguiar, and Yaneer Bar-Yam, Mean field approximation to a spatial host-pathogen model, Physical Review E 67: 047102 (2003).

Benjamin Shargel, Hiroki Sayama, Irving R. Epstein, and Yaneer Bar-Yam, Optimization of robustness and connectivity in complex networks, Physical Review Letters 90(6): 068701 (2003).

Yaneer Bar-Yam, Sum rule for multiscale representations of kinematic systems, Advances in Complex Systems 5: 409-431 (2002).

Hiroki Sayama, Marcus A.M. de Aguiar, Yaneer Bar-Yam, and Michel Baranger, Spontaneous pattern formation and genetic invasion in locally mating and competing populations, Physical Review E 65: 051919 (2002).

Mark Klein, Hiroki Sayama, Peyman Faratin, and Yaneer Bar-Yam, A complex systems perspective on computer-supported collaborative design technology, Communications of the ACM 45(11): 27-31 (2002).

Marcus A.M. de Aguiar, Hiroki Sayama, Erik Rauch, Yaneer Bar-Yam, and Michel Baranger, Stability and instability of polymorphic populations and the role of multiple breeding seasons in phase III of Wright's shifting balance theory, Physical Review E 65: 031909 (2002).

Peyman Faratin, Mark Klein, Hiroki Sayama, and Yaneer Bar-Yam, Simple negotiating agents in complex games: Emergent equilibria and dominance of strategies, in Intelligent Agent VIII: Agent Theories, Architectures, and Languages, Lecture Notes in Artificial Intelligence, 2333 (Springer-Verlag, 2002), pp. 367-377.

Mark Klein, Hiroki Sayama, Peyman Faratin, and Yaneer Bar-Yam, A complex systems perspective on computer-supported collaborative design technology, Communications of the ACM 45(11): 27-31 (2002).

Hiroki Sayama, Les Kaufman, Marcus A.M. de Aguiar, Erik Rauch, Charles Goodnight, and Yaneer Bar-Yam, Breakdown of the gene-centered view: What is beyond Neo-Darwinian evolution?, in Unifying Themes in Complex Systems: Volume IV (Springer, 2002).

Reza Sadr-Lahijany and Yaneer Bar-Yam, Substructure in complex systems and partially subdivided neural networks I: Stability of composite patterns, InterJournal (2002).

Yaneer Bar-Yam, Complexity rising: From human beings to human civilization, a complexity profile, in Encyclopedia of Life Support Systems (EOLSS), developed under the Auspices of the UNESCO (EOLSS Publishers, Oxford, UK, 2002).

Erik Rauch, Hiroki Sayama, and Yaneer Bar-Yam, Relationship between measures of fitness and time scale in evolution, Physical Review Letters 88: 228101 (2002).

Peter M. Senge, Goran Carstedt, Patrick L Porter, Innovating Our Way to the Next Industrial Revolution, Sloan Management Review 42(2): 24-38 (Winter 2001).

Hiroki Sayama and Yaneer Bar-Yam, The gene centered view of evolution and symmetry breaking and pattern formation in spatially distributed evolutionary processes, in Nonlinear Dynamics in the Life and Social Sciences, W. Sulis and I. Trofimova, Eds. (NATO Science Series A/320, IOS Press, 2001), pp. 360-368.

Yaneer Bar-Yam, Multiscale representation phase I, Report to Chief of Naval Operations Strategic Studies Group (2001).

Nelson P. Repenning and JohnD. Sterman, Nobody ever gets credit for fixing problems that never happened: Creating and sustaining process improvement, Californian Management Review 43(4): 64-92 (2001).

Peyman Faratin, Mark Klein, Hiroki Sayama, and Yaneer Bar-Yam, Simple negotiating agents in complex games: Emergent equilibria and dominance of strategies, in Proceedings of the Eighth International Workshop on Agent Theories, Architectures, and Languages (ATAL-2001) (2001), pp. 42-53.

Mark Klein and Yaneer Bar-Yam, Handling emergent dysfunctions in open peer-to-peer systems, ROMA Working Paper ROMA-WP-2001-03 (Massachusetts Institute of Technology, 2001).

Mark Klein, Peyman Faratin, Hiroki Sayama, and Yaneer Bar-Yam, Negotiating complex contracts, in Proceedings of the AAAI Fall 2001 Symposium on Negotiation Methods for Autonomous Cooperative Systems (2001).

Mark Klein, Hiroki Sayama, Peyman Faratin, and Yaneer Bar-Yam, What complex systems research can teach us about collaborative design, in Proceedings of the Sixth International Conference on Computer Supported Cooperative Work in Design (CSCWD-2001) (IEEE Press, 2001), pp. 5-12.

Moshe Ben-Ezra, Michael Werman, and Yaneer Bar-Yam, A self-stabilizing, robust region finder applied to color and optical flow pictures, Image and Vision Computing 19(7): 427-433 (May, 2001).

Hiroki Sayama, Les Kaufman, and Yaneer Bar-Yam, Symmetry breaking and coarsening in spatially distributed evolutionary processes including sexual reproduction and disruptive selection, Physical Review E 62: 7065-7069 (2000).

Hiroki Sayama, Self-replicating worms that increase structural complexity through gene transmission, in Artificial Life, M.A. Bedau, J.S. McCaskill, N.H. Packard, S. Rasmussen, Eds. (MIT Press, 2000), pp. 21-30.

Yaneer Bar-Yam, Formalizing the gene-centered view of evolution, Advances in Complex Systems 2, 277-281 (1999).

Mark Smith and Craig Feied, DRAFT: The emergency department as a complex system, George Washington University School of Medicine and Health Sciences (1999).

Hiroki Sayama, A new structurally dissolvable self-reproducing loop evolving in a simple cellular automata space, Artificial Life 5(4): 343-365 (1999).

Raissa M. D'Souza, Yaneer Bar-Yam, and Mehran Kardar, Sensitivity of ballistic deposition to pseudorandom number generators, Physical Review E 57(5): 5044-5052 (1998).

Yaneer Bar-Yam, Human civilization II: A complex(ity) transition, in Dynamics of Complex Systems (Westview Press, 1997).

Darren M. Pierre, Daniel Goldman, Yaneer Bar-Yam, and Alan S. Perelson, Somatic evolution in the immune system: the need for germinal centers for efficient affinity maturation, Journal of Theoretical Biology 186: 159-171 (1997).

Alice Davidson, Martin H. Teicher, Yaneer Bar-Yam, The role of environmental complexity in the well being of the elderly, Complexity and Chaos in Nursing 3: 5-12 (1997).

Yaneer Bar-Yam, Sleep as temporary brain dissociation, CSDL Research Report YB-0005-10.10.92 (1993).

Peter M. Senge, The leader’s new work: Building learning organizations, Sloan Management Review 32(1): 7-23 (Fall 1990).